X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentUtils.java;fp=src%2Fjalview%2Fanalysis%2FAlignmentUtils.java;h=f1084a7d74e40b05120a189540077ee1fddc29d0;hb=947109cebef3e98693ffc0a70b5bffcbd32217e2;hp=0440b24d18b1d4884f72b69ccf84666f26a06ed4;hpb=825ef108d5bfcf9b3e3eb9422b27658c80ab0854;p=jalview.git

diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java
index 0440b24..f1084a7 100644
--- a/src/jalview/analysis/AlignmentUtils.java
+++ b/src/jalview/analysis/AlignmentUtils.java
@@ -24,7 +24,6 @@ import static jalview.io.gff.GffConstants.CLINICAL_SIGNIFICANCE;
 
 import jalview.datamodel.AlignedCodon;
 import jalview.datamodel.AlignedCodonFrame;
-import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
@@ -36,6 +35,7 @@ import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.datamodel.SequenceMapping;
 import jalview.datamodel.features.SequenceFeatures;
 import jalview.io.gff.Gff3Helper;
 import jalview.io.gff.SequenceOntologyI;
@@ -1935,7 +1935,7 @@ public class AlignmentUtils
             .findMappingsForSequence(proteinProduct, mappings);
     for (AlignedCodonFrame acf : mappingsToPeptide)
     {
-      for (SequenceToSequenceMapping map : acf.getMappings())
+      for (SequenceMapping map : acf.getMappings())
       {
         Mapping mapping = map.getMapping();
         if (mapping != aMapping