X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentUtils.java;h=c521d9b2f72edd1e57a3a0ca71fc9f9d441b8066;hb=655b78299307682a4c7a6e5af0ed4618cbc9c924;hp=ea330d8ae648479014612ec58bd5792bffa5bd42;hpb=a3b6803932b6b0ce73a44982bc58c56b7b4def4b;p=jalview.git

diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java
index ea330d8..c521d9b 100644
--- a/src/jalview/analysis/AlignmentUtils.java
+++ b/src/jalview/analysis/AlignmentUtils.java
@@ -1731,8 +1731,7 @@ public class AlignmentUtils
            */
           AlignedCodonFrame dnaToCdsMapping = new AlignedCodonFrame();
           MapList dnaToCdsMap = new MapList(mapList.getFromRanges(),
-                  cdsRange, 1,
-                  1);
+                  cdsRange, 1, 1);
           dnaToCdsMapping.addMap(dnaSeq.getDatasetSequence(), cdsSeqDss,
                   dnaToCdsMap);
           if (!mappings.contains(dnaToCdsMapping))
@@ -1786,7 +1785,7 @@ public class AlignmentUtils
           /*
            * transfer any features on dna that overlap the CDS
            */
-          transferFeatures(dnaSeq, cdsSeq, cdsToProteinMap, null,
+          transferFeatures(dnaSeq, cdsSeq, dnaToCdsMap, null,
                   SequenceOntologyI.CDS);
         }
       }