X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FCrossRef.java;h=81fad277f8546b314de35d6a10a937f0ee7d5b15;hb=20ff4429a9545eeea6857818b55ec29eaf0388ad;hp=578b18fa74557ea7dcefe96bb8f408240c96be84;hpb=0d9271962a4c5e720ec8284d579bda635b59b231;p=jalview.git

diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java
index 578b18f..81fad27 100644
--- a/src/jalview/analysis/CrossRef.java
+++ b/src/jalview/analysis/CrossRef.java
@@ -271,6 +271,18 @@ public class CrossRef
              * but findInDataset() matches ENSP when looking for Uniprot...
              */
             SequenceI matchInDataset = findInDataset(xref);
+            if (matchInDataset != null && xref.getMap().getTo() != null
+                    && matchInDataset != xref.getMap().getTo())
+            {
+              System.err
+                      .println("Implementation problem (reopen JAL-2154): CrossRef.findInDataset seems to have recovered a different sequence than the one explicitly mapped for xref."
+                              + "Found:"
+                              + matchInDataset
+                              + "\nExpected:"
+                              + xref.getMap().getTo()
+                              + "\nFor xref:"
+                              + xref);
+            }
             /*matcher.findIdMatch(mappedTo);*/
             if (matchInDataset != null)
             {