X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FCrossRef.java;h=c54357e316baad23bbaaccc8ce6eced00d527be3;hb=fe4ab7f363cfaed56db7c346f159f2d89ae4e66f;hp=00bb63ac01bb6d1dd5a791060384876065bd5301;hpb=beff7ac7ab7be2c24ccb179be16b8816d2c18610;p=jalview.git diff --git a/src/jalview/analysis/CrossRef.java b/src/jalview/analysis/CrossRef.java index 00bb63a..c54357e 100644 --- a/src/jalview/analysis/CrossRef.java +++ b/src/jalview/analysis/CrossRef.java @@ -483,7 +483,7 @@ public class CrossRef private void removeAlreadyRetrievedSeqs(List sourceRefs, boolean fromDna) { - List dbrSourceSet = new ArrayList(sourceRefs); + List dbrSourceSet = new ArrayList<>(sourceRefs); List dsSeqs = dataset.getSequences(); for (int ids = 0, nds = dsSeqs.size(); ids < nds; ids++) { @@ -929,7 +929,7 @@ public class CrossRef if (fromDna) { - AlignmentUtils.computeProteinFeatures(mapFrom, mapTo, mapping); + // AlignmentUtils.computeProteinFeatures(mapFrom, mapTo, mapping); mappings.addMap(mapFrom, mapTo, mapping); } else