X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FDna.java;h=1d5f996b44279f5339d86474ac3f19bf364be00c;hb=07bb0da70ad46444f5f9bc0b2fa80e9ee3805394;hp=ab606f7d5194b3e6967d1d9eccad3913f0be05c6;hpb=ddbd88c078781bdbe332dbc3e87b2ed600e717e3;p=jalview.git

diff --git a/src/jalview/analysis/Dna.java b/src/jalview/analysis/Dna.java
index ab606f7..1d5f996 100644
--- a/src/jalview/analysis/Dna.java
+++ b/src/jalview/analysis/Dna.java
@@ -20,8 +20,13 @@
  */
 package jalview.analysis;
 
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Comparator;
+import java.util.List;
+import java.util.Map;
+
 import jalview.api.AlignViewportI;
-import jalview.bin.Cache;
 import jalview.datamodel.AlignedCodon;
 import jalview.datamodel.AlignedCodonFrame;
 import jalview.datamodel.Alignment;
@@ -42,12 +47,6 @@ import jalview.util.DBRefUtils;
 import jalview.util.MapList;
 import jalview.util.ShiftList;
 
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Comparator;
-import java.util.List;
-import java.util.Map;
-
 public class Dna
 {
   private static final String STOP_X = "X";
@@ -617,14 +616,7 @@ public class Dna
       if (rf != 0)
       {
         final String errMsg = "trimming contigs for incomplete terminal codon.";
-        if (Cache.log != null)
-        {
-          Cache.log.debug(errMsg);
-        }
-        else
-        {
-          System.err.println(errMsg);
-        }
+        System.err.println(errMsg);
         // map and trim contigs to ORF region
         vc = scontigs.length - 1;
         lastnpos = vismapping.shift(lastnpos); // place npos in context of