X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FFinder.java;h=72097e0209687a4e4cbdab1c83ea25bb6b7d2447;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=61e57096168ac70eeabab6d8d813f97c415f175d;hpb=c3d80a77b6782d563325e9fed92c8de371e07188;p=jalview.git

diff --git a/src/jalview/analysis/Finder.java b/src/jalview/analysis/Finder.java
index 61e5709..72097e0 100644
--- a/src/jalview/analysis/Finder.java
+++ b/src/jalview/analysis/Finder.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -42,6 +42,8 @@ public class Finder
 
   boolean caseSensitive = false;
 
+  private boolean includeDescription = false;
+
   boolean findAll = false;
 
   com.stevesoft.pat.Regex regex = null;
@@ -150,7 +152,8 @@ public class Finder
           }
         }
 
-        if (regex.search(seq.getDescription()))
+        if (isIncludeDescription() && seq.getDescription() != null
+                && regex.search(seq.getDescription()))
         {
           idMatch.addElement(seq);
           hasResults = true;
@@ -203,7 +206,7 @@ public class Finder
           {
             continue;
           }
-// if invalid string used, then regex has no matched to/from
+          // if invalid string used, then regex has no matched to/from
           int sres = seq
                   .findPosition(resIndex
                           + Integer.parseInt(spaces.elementAt(resIndex)
@@ -373,4 +376,14 @@ public class Finder
   {
     this.seqIndex = seqIndex;
   }
+
+  public boolean isIncludeDescription()
+  {
+    return includeDescription;
+  }
+
+  public void setIncludeDescription(boolean includeDescription)
+  {
+    this.includeDescription = includeDescription;
+  }
 }