X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FGeneticCodes.java;h=a2ecdca85b84a0ec0ec03b46fc54fd953aab2779;hb=45bf1ca88efba1a6510947bbad6667a210ccd752;hp=8d69b0ba679e0156f237eaa79ea55b840af22062;hpb=9d2408483e451285fd555c3cd6e0273977acbaa7;p=jalview.git

diff --git a/src/jalview/analysis/GeneticCodes.java b/src/jalview/analysis/GeneticCodes.java
index 8d69b0b..a2ecdca 100644
--- a/src/jalview/analysis/GeneticCodes.java
+++ b/src/jalview/analysis/GeneticCodes.java
@@ -21,9 +21,6 @@
 package jalview.analysis;
 
 import java.util.Locale;
-
-import jalview.bin.Cache;
-
 import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStream;
@@ -33,6 +30,8 @@ import java.util.LinkedHashMap;
 import java.util.Map;
 import java.util.StringTokenizer;
 
+import jalview.bin.Console;
+
 /**
  * A singleton that provides instances of genetic code translation tables
  * 
@@ -162,7 +161,7 @@ public final class GeneticCodes
       }
     } catch (IOException | NullPointerException e)
     {
-      Cache.log.error(
+      Console.error(
               "Error reading genetic codes data file " + fileName + ": "
               + e.getMessage());
     }
@@ -217,7 +216,7 @@ public final class GeneticCodes
       }
     } catch (IOException e)
     {
-      Cache.log.error(
+      Console.error(
               "Error reading nucleotide ambiguity codes data file: "
                       + e.getMessage());
     }
@@ -294,7 +293,7 @@ public final class GeneticCodes
                 line.lastIndexOf(QUOTE));
         if (aminos.length() != NUCS_COUNT_CUBED) // 4 * 4 * 4 combinations
         {
-          Cache.log.error("wrong data length in code table: " + line);
+          Console.error("wrong data length in code table: " + line);
         }
         else
         {