X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FGrouping.java;h=066814e626b390897a812565b1262958f61aadc8;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=787e036917392936d372a85cd94ec3225f3dc7c0;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/src/jalview/analysis/Grouping.java b/src/jalview/analysis/Grouping.java index 787e036..066814e 100644 --- a/src/jalview/analysis/Grouping.java +++ b/src/jalview/analysis/Grouping.java @@ -127,6 +127,11 @@ public class Grouping } } } + + /* + * get selected columns (in the order they were selected); + * note this could include right-to-left ranges + */ int[] spos = new int[cs.getSelected().size()]; int width = -1; int i = 0; @@ -134,7 +139,7 @@ public class Grouping { spos[i++] = pos.intValue(); } - ; + for (i = 0; i < sequences.length; i++) { int slen = sequences[i].getLength(); @@ -173,8 +178,8 @@ public class Grouping i = 0; for (String key : gps.keySet()) { - SequenceGroup group = new SequenceGroup(gps.get(key), "Subseq: " - + key, null, true, true, false, 0, width - 1); + SequenceGroup group = new SequenceGroup(gps.get(key), + "Subseq: " + key, null, true, true, false, 0, width - 1); groups[i++] = group; }