X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FGrouping.java;h=066814e626b390897a812565b1262958f61aadc8;hb=47ca18b4cfc7db54fc55a91fe5f0d61be989abf8;hp=ddf483b3dcd6f3836b5ba08254fa9acbdae31a40;hpb=fefc840cd97faf34b69ca387e8a38e3b9c79b92f;p=jalview.git

diff --git a/src/jalview/analysis/Grouping.java b/src/jalview/analysis/Grouping.java
index ddf483b..066814e 100644
--- a/src/jalview/analysis/Grouping.java
+++ b/src/jalview/analysis/Grouping.java
@@ -25,7 +25,6 @@ import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 
 import java.util.ArrayList;
-import java.util.Arrays;
 import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
@@ -92,8 +91,8 @@ public class Grouping
     i = 0;
     for (String key : gps.keySet())
     {
-      SequenceGroup group = new SequenceGroup(gps.get(key), "Subseq: "
-              + key, null, true, true, false, 0, width - 1);
+      SequenceGroup group = new SequenceGroup(gps.get(key),
+              "Subseq: " + key, null, true, true, false, 0, width - 1);
 
       groups[i++] = group;
     }
@@ -128,6 +127,11 @@ public class Grouping
         }
       }
     }
+
+    /*
+     * get selected columns (in the order they were selected);
+     * note this could include right-to-left ranges
+     */
     int[] spos = new int[cs.getSelected().size()];
     int width = -1;
     int i = 0;
@@ -136,11 +140,6 @@ public class Grouping
       spos[i++] = pos.intValue();
     }
 
-    /*
-     * ensure column selection is in ascending order
-     */
-    Arrays.sort(spos);
-
     for (i = 0; i < sequences.length; i++)
     {
       int slen = sequences[i].getLength();
@@ -179,8 +178,8 @@ public class Grouping
     i = 0;
     for (String key : gps.keySet())
     {
-      SequenceGroup group = new SequenceGroup(gps.get(key), "Subseq: "
-              + key, null, true, true, false, 0, width - 1);
+      SequenceGroup group = new SequenceGroup(gps.get(key),
+              "Subseq: " + key, null, true, true, false, 0, width - 1);
 
       groups[i++] = group;
     }