X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FNJTree.java;h=974175f51f72a8f05bf76859739e3344e93bbbef;hb=fb4c54617dd9c5ac605853551478596902f34541;hp=98916e36a36b1c6996aadcdfc96b89c47e625415;hpb=04011072920c5e2587a8d549869ee47e28ad7d81;p=jalview.git

diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java
index 98916e3..974175f 100755
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -1018,13 +1018,13 @@ public class NJTree
      *
      * @return null or cut'n'pasteable alignment
      */
-    public String printOriginalSequenceData()
+    public String printOriginalSequenceData(char gapChar)
     {
       if (seqData==null)
         return null;
-//      return seqData.getSequenceString(Comparison.GapChars[0]);
+
       StringBuffer sb = new StringBuffer();
-      String[] seqdatas = seqData.getSequenceStrings(Comparison.GapChars.charAt(0));
+      String[] seqdatas = seqData.getSequenceStrings(gapChar);
       for(int i=0; i<seqdatas.length; i++)
       {
         sb.append(new jalview.util.Format("%-" + 15 + "s").form(