X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=21ad1cc5832bc9cabd8771e079c61f33ee41b61a;hb=45e015aabe8f35a4a13be26e7630641ef8c94fbb;hp=332f89f5f8576707550f0d4adce4dca69eecd53d;hpb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;p=jalview.git
diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index 332f89f..21ad1cc 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -1,46 +1,34 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see
- * Title: - *
- * - *- * Description: - *
- * - *- * Copyright: Copyright (c) 2004 - *
- * - *- * Company: Dundee University - *
- * - * @author not attributable - * @version 1.0 - */ public class SeqsetUtils { @@ -71,12 +59,19 @@ public class SeqsetUtils sfeat.addElement(sfarray[i]); } } - sqinfo.put("SeqFeatures", sfeat); - sqinfo.put("PdbId", (seq.getPDBId() != null) ? seq.getPDBId() - : new Vector()); - sqinfo.put("datasetSequence", - (seq.getDatasetSequence() != null) ? seq.getDatasetSequence() - : new Sequence("THISISAPLACEHOLDER", "")); + if (seq.getDatasetSequence() == null) + { + sqinfo.put("SeqFeatures", sfeat); + sqinfo.put("PdbId", + (seq.getAllPDBEntries() != null) ? seq.getAllPDBEntries() + : new Vector