X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=2ede9ed477d6b6c0e8cf303a823874e93b8bc085;hb=3ef44bef1f825d26977dedd1608469712a87fe15;hp=27ad577c555f50b6d284a8e53ea6545258a595d0;hpb=b6acaa87c22c1d31deb3f9b87a143def43ae34b7;p=jalview.git diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java index 27ad577..2ede9ed 100755 --- a/src/jalview/analysis/SeqsetUtils.java +++ b/src/jalview/analysis/SeqsetUtils.java @@ -20,9 +20,14 @@ */ package jalview.analysis; -import java.util.*; +import java.util.Enumeration; +import java.util.Hashtable; +import java.util.Vector; -import jalview.datamodel.*; +import jalview.datamodel.PDBEntry; +import jalview.datamodel.Sequence; +import jalview.datamodel.SequenceFeature; +import jalview.datamodel.SequenceI; public class SeqsetUtils { @@ -56,7 +61,7 @@ public class SeqsetUtils } sqinfo.put("SeqFeatures", sfeat); sqinfo.put("PdbId", (seq.getPDBId() != null) ? seq.getPDBId() - : new Vector()); + : new Vector()); sqinfo.put("datasetSequence", (seq.getDatasetSequence() != null) ? seq.getDatasetSequence() : new Sequence("THISISAPLACEHOLDER", "")); @@ -84,7 +89,7 @@ public class SeqsetUtils Integer start = (Integer) sqinfo.get("Start"); Integer end = (Integer) sqinfo.get("End"); Vector sfeatures = (Vector) sqinfo.get("SeqFeatures"); - Vector pdbid = (Vector) sqinfo.get("PdbId"); + Vector pdbid = (Vector) sqinfo.get("PdbId"); String description = (String) sqinfo.get("Description"); Sequence seqds = (Sequence) sqinfo.get("datasetSequence"); if (oldname == null)