X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=332f89f5f8576707550f0d4adce4dca69eecd53d;hb=ec1ba9894335243c7b6af28f73d3c686a6e88903;hp=d8da4970bc3d8dcc6930a57cde99349d552caece;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java index d8da497..332f89f 100755 --- a/src/jalview/analysis/SeqsetUtils.java +++ b/src/jalview/analysis/SeqsetUtils.java @@ -1,5 +1,5 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * * This file is part of Jalview. @@ -74,8 +74,9 @@ public class SeqsetUtils sqinfo.put("SeqFeatures", sfeat); sqinfo.put("PdbId", (seq.getPDBId() != null) ? seq.getPDBId() : new Vector()); - sqinfo.put("datasetSequence", (seq.getDatasetSequence() != null) ? seq - .getDatasetSequence() : new Sequence("THISISAPLACEHOLDER", "")); + sqinfo.put("datasetSequence", + (seq.getDatasetSequence() != null) ? seq.getDatasetSequence() + : new Sequence("THISISAPLACEHOLDER", "")); return sqinfo; } @@ -287,8 +288,8 @@ public class SeqsetUtils for (int i = 0, j = sequences.length; i < j; i++) { String tempseq = jalview.analysis.AlignSeq.extractGaps( - jalview.util.Comparison.GapChars, sequences[i] - .getSequenceAsString()); + jalview.util.Comparison.GapChars, + sequences[i].getSequenceAsString()); if (tempseq.length() == 0) {