X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=5a246f8d84f83fd644cc6a03ebd1d8da250e8f01;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=e2ed9b451ca94bd64da7c0a675835ad4c1ab205c;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git

diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index e2ed9b4..5a246f8 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -21,6 +21,7 @@
 package jalview.analysis;
 
 import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.HiddenMarkovModel;
 import jalview.datamodel.PDBEntry;
@@ -121,7 +122,7 @@ public class SeqsetUtils
     {
       if (sqinfo.features.isPresent())
       {
-        Cache.log.warn("Setting dataset sequence for a sequence which has " +
+        Console.warn("Setting dataset sequence for a sequence which has " +
             "sequence features. Dataset sequence features will not be visible.");
         assert false;
       }
@@ -245,14 +246,14 @@ public class SeqsetUtils
         {
           if (!quiet)
           {
-            Cache.log.warn(format("Can't find '%s' in uniquified alignment",
+            Console.warn(format("Can't find '%s' in uniquified alignment",
                 key));
           }
         }
       } catch (ClassCastException ccastex) {
         if (!quiet)
         {
-          Cache.log.error("Unexpected object in SeqSet map : "+ key.getClass());
+          Console.error("Unexpected object in SeqSet map : "+ key.getClass());
         }
       }
     }
@@ -265,7 +266,7 @@ public class SeqsetUtils
       {
         sb.append(", " + i.nextElement().getName());
       }
-      Cache.log.warn(sb.toString());
+      Console.warn(sb.toString());
       return false;
     }