X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSeqsetUtils.java;h=b0ecfdec4d6659ad1c801871cc911c1955638f67;hb=60073d3f838affacd3f4158c3e7d069652d26602;hp=d8da4970bc3d8dcc6930a57cde99349d552caece;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git
diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index d8da497..b0ecfde 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -1,46 +1,34 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see
- * Title: - *
- * - *- * Description: - *
- * - *- * Copyright: Copyright (c) 2004 - *
- * - *- * Company: Dundee University - *
- * - * @author not attributable - * @version 1.0 - */ public class SeqsetUtils { @@ -71,11 +59,19 @@ public class SeqsetUtils sfeat.addElement(sfarray[i]); } } - sqinfo.put("SeqFeatures", sfeat); - sqinfo.put("PdbId", (seq.getPDBId() != null) ? seq.getPDBId() - : new Vector()); - sqinfo.put("datasetSequence", (seq.getDatasetSequence() != null) ? seq - .getDatasetSequence() : new Sequence("THISISAPLACEHOLDER", "")); + if (seq.getDatasetSequence() == null) + { + sqinfo.put("SeqFeatures", sfeat); + sqinfo.put("PdbId", + (seq.getAllPDBEntries() != null) ? seq.getAllPDBEntries() + : new Vector