X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSequenceFeatureFetcher.java;h=667a2dd31b9310fb62d11632464edb84eb021953;hb=7a153c72e8f1f8ccad77452c64ab94fa774bd79a;hp=6560504e7c15e65a2a0d1803b43ce44c0dcfc6dc;hpb=feb00a2deac901163f9d130b0ed0195b9ae73bfa;p=jalview.git

diff --git a/src/jalview/analysis/SequenceFeatureFetcher.java b/src/jalview/analysis/SequenceFeatureFetcher.java
index 6560504..667a2dd 100755
--- a/src/jalview/analysis/SequenceFeatureFetcher.java
+++ b/src/jalview/analysis/SequenceFeatureFetcher.java
@@ -114,7 +114,8 @@ public class SequenceFeatureFetcher implements Runnable
 
   if(unknownSequences.size()>0)
   {
-    WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);
+    //ignore for now!!!!!!!!!!
+  //  WSWUBlastClient blastClient = new WSWUBlastClient(align, unknownSequences);
   }
 
 }
@@ -202,16 +203,12 @@ void ReadUniprotFile(String [] result, RandomAccessFile out, AlignmentI align)
        if(out!=null)
          try{ out.writeBytes("</feature>\n"); }catch(Exception ex){}
 
-
-       if(sstart>=sequence.getStart() && eend<=sequence.getEnd())
-       {
          SequenceFeature sf = new SequenceFeature(type,
              sstart,
              eend,
              description,
              status);
          features.add(sf);
-       }
      }
 
      if(result[r].indexOf("<sequence")>-1)