X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSequenceIdMatcher.java;h=454bc0916a31dc7123e5b7d0b54389b237639bf6;hb=25217bbd06c4435ad995fd8ddf3620c3b1d68cd3;hp=5b812dd28c5c8fe55d23272be4c49aee0976c585;hpb=204617b73ee07ba28dcec3ffdf6b8e8eb2062011;p=jalview.git diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java index 5b812dd..454bc09 100755 --- a/src/jalview/analysis/SequenceIdMatcher.java +++ b/src/jalview/analysis/SequenceIdMatcher.java @@ -58,14 +58,14 @@ public class SequenceIdMatcher // associated with this key. names.put(new SeqIdName(seq.getDisplayId(true)), seq); SequenceI dbseq = seq; - while (dbseq.getDatasetSequence()!=null) + while (dbseq.getDatasetSequence() != null) { dbseq = dbseq.getDatasetSequence(); } // add in any interesting identifiers - if (dbseq.getDBRef() != null) + if (dbseq.getDBRefs() != null) { - DBRefEntry dbr[] = dbseq.getDBRef(); + DBRefEntry dbr[] = dbseq.getDBRefs(); SeqIdName sid = null; for (int r = 0; r < dbr.length; r++) { @@ -191,7 +191,7 @@ public class SequenceIdMatcher SeqIdName nam = new SeqIdName(seqnam); List m = findAllIdMatches(nam); - if (m!=null) + if (m != null) { return m.toArray(new SequenceI[m.size()]); }