X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSequenceIdMatcher.java;h=9d33996333997931356a5f3ca6b7530e7cb0ce77;hb=3bdd4947c87108581abe34d05c878ee110b60f72;hp=f4f305b08da6a19e53c2bd61c0f1c53d4f1e787b;hpb=fbec1b33d0fc169d72be059a5d2cf12b248270e1;p=jalview.git

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index f4f305b..9d33996 100755
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -146,6 +146,8 @@ public class SequenceIdMatcher
     /**
      * Characters that define the end of a unique sequence ID at
      * the beginning of an arbitrary ID string
+     * JBPNote: This is a heuristic that will fail for arbritrarily extended sequence id's
+     * (like portions of an aligned set of repeats from one sequence)
      */
     private String WORD_SEP="~. |#\\/<>!\"£$%^*)}[@',?";