X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FSequenceIdMatcher.java;h=e217aa1d89cbbeb2ac06312bce7c19d6bf191452;hb=dfa04e77181fccfa6229ffef1591fc9c622d9b39;hp=eb912c803eef0378fe72bbd49b3aaa8d05eaa30a;hpb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;p=jalview.git

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index eb912c8..e217aa1 100755
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -1,19 +1,20 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.analysis;
 
@@ -39,10 +40,15 @@ public class SequenceIdMatcher
       // TODO: deal with ID collisions - SequenceI should be appended to list
       // associated with this key.
       names.put(new SeqIdName(seqs[i].getDisplayId(true)), seqs[i]);
+      SequenceI dbseq = seqs[i];
+      while (dbseq.getDatasetSequence()!=null)
+      {
+        dbseq = dbseq.getDatasetSequence();
+      }
       // add in any interesting identifiers
-      if (seqs[i].getDBRef() != null)
+      if (dbseq.getDBRef() != null)
       {
-        DBRefEntry dbr[] = seqs[i].getDBRef();
+        DBRefEntry dbr[] = dbseq.getDBRef();
         SeqIdName sid = null;
         for (int r = 0; r < dbr.length; r++)
         {