X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FStructureFrequency.java;h=3f5099bd3ac2dc4d151f0e3a4f0c9009207d49dd;hb=85299bc2db43c8b108169661ebc1c4d9b2d3d2e5;hp=cc97be092aeb2ffcc1ab9f98554a96224e879368;hpb=042832306c7e7aa0484079f3bab1e141b2944de5;p=jalview.git

diff --git a/src/jalview/analysis/StructureFrequency.java b/src/jalview/analysis/StructureFrequency.java
index cc97be0..3f5099b 100644
--- a/src/jalview/analysis/StructureFrequency.java
+++ b/src/jalview/analysis/StructureFrequency.java
@@ -148,7 +148,7 @@ public class StructureFrequency
           {
             if (sequences[j] == null)
             {
-              System.err.println(
+              jalview.bin.Console.errPrintln(
                       "WARNING: Consensus skipping null sequence - possible race condition.");
               continue;
             }
@@ -226,14 +226,14 @@ public class StructureFrequency
           maxResidue = "{";
         }
       }
-      residueHash.put(MAXCOUNT, new Integer(count));
+      residueHash.put(MAXCOUNT, Integer.valueOf(count));
       residueHash.put(MAXRESIDUE, maxResidue);
 
       percentage = ((float) count * 100) / jSize;
-      residueHash.put(PID_GAPS, new Float(percentage));
+      residueHash.put(PID_GAPS, Float.valueOf(percentage));
 
       percentage = ((float) count * 100) / nongap;
-      residueHash.put(PID_NOGAPS, new Float(percentage));
+      residueHash.put(PID_NOGAPS, Float.valueOf(percentage));
 
       if (result[i] == null)
       {
@@ -260,14 +260,14 @@ public class StructureFrequency
           residueHash.put(PAIRPROFILE, pairs);
         }
 
-        residueHash.put(MAXCOUNT, new Integer(count));
+        residueHash.put(MAXCOUNT, Integer.valueOf(count));
         residueHash.put(MAXRESIDUE, maxResidue);
 
         percentage = ((float) count * 100) / jSize;
-        residueHash.put(PID_GAPS, new Float(percentage));
+        residueHash.put(PID_GAPS, Float.valueOf(percentage));
 
         percentage = ((float) count * 100) / nongap;
-        residueHash.put(PID_NOGAPS, new Float(percentage));
+        residueHash.put(PID_NOGAPS, Float.valueOf(percentage));
 
         result[bpEnd] = residueHash;
       }