X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FTreeBuilder.java;h=0cd340e88b57dde048bb634f1e244fbce244e131;hb=24003ce252e653972ece110e077acd16ed47fe15;hp=30b83b3ecc68a2f0f40b63b22184b72252a894f3;hpb=c2ca13f710c1511d8e1face37f9e8a5b04e6dcd0;p=jalview.git diff --git a/src/jalview/analysis/TreeBuilder.java b/src/jalview/analysis/TreeBuilder.java index 30b83b3..0cd340e 100644 --- a/src/jalview/analysis/TreeBuilder.java +++ b/src/jalview/analysis/TreeBuilder.java @@ -53,8 +53,6 @@ public abstract class TreeBuilder protected MatrixI distances; - public MatrixI testDistances; - protected int mini; protected int minj; @@ -305,8 +303,8 @@ public abstract class TreeBuilder this.scoreModel = sm; this.scoreParams = scoreOptions; - testDistances = scoreModel.findDistances(seqData, scoreParams); distances = scoreModel.findDistances(seqData, scoreParams); + makeLeaves(); noClus = clusters.size();