X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FTreeModel.java;fp=src%2Fjalview%2Fanalysis%2FTreeModel.java;h=ce79a650c4b8b8e6f781a3caef8ef6d4d6ebe048;hb=307c017d3bee909cbd5a7f5965388d65039a4849;hp=90fe089809e6c4ac75af13d008cba32bfa68b7f6;hpb=f52c6d390a8bbc118582f3ba3ca06170bf9d5e48;p=jalview.git

diff --git a/src/jalview/analysis/TreeModel.java b/src/jalview/analysis/TreeModel.java
index 90fe089..ce79a65 100644
--- a/src/jalview/analysis/TreeModel.java
+++ b/src/jalview/analysis/TreeModel.java
@@ -353,6 +353,7 @@ public class TreeModel
 
     if ((nd.left() == null) && (nd.right() == null))
     {
+    	// TODO FIX FOR COLUMN TREES
       jalview.bin.Console.outPrintln("Leaf = " + ((SequenceI) nd.element()).getName());
       jalview.bin.Console.outPrintln("Dist " + nd.dist);
       jalview.bin.Console.outPrintln("Boot " + nd.getBootstrap());
@@ -430,7 +431,7 @@ public class TreeModel
 
     if ((nd.left() == null) && (nd.right() == null))
     {
-      nd.height = ((BinaryNode) nd.parent()).height + nd.dist;
+      nd.height = nd.parent().height + nd.dist;
 
       if (nd.height > maxheight)
       {
@@ -445,7 +446,7 @@ public class TreeModel
     {
       if (nd.parent() != null)
       {
-        nd.height = ((BinaryNode) nd.parent()).height + nd.dist;
+        nd.height = nd.parent().height + nd.dist;
       }
       else
       {