X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FTreeModel.java;h=5a4180234ab6aedd93ca70b472271047250dbb40;hb=a42904684c75b2729d763af933e5a991a3424f67;hp=62b05944c3c9d8bb67864d74ccf62d45303e7b8d;hpb=2ff143c5a47bd7bde7409ce1457bf84e332660a8;p=jalview.git

diff --git a/src/jalview/analysis/TreeModel.java b/src/jalview/analysis/TreeModel.java
index 62b0594..5a41802 100644
--- a/src/jalview/analysis/TreeModel.java
+++ b/src/jalview/analysis/TreeModel.java
@@ -95,6 +95,7 @@ public class TreeModel
   {
     this(tree.getSequences(), tree.getTopNode(), tree.hasDistances(), tree
             .hasBootstrap(), tree.hasRootDistance());
+    seqData = tree.getOriginalData();
   }
 
   /**
@@ -455,30 +456,6 @@ public class TreeModel
   }
 
   /**
-   * Returns original alignment data used for calculation - or null where not
-   * available.
-   * 
-   * @return null or cut'n'pasteable alignment
-   */
-  public String printOriginalSequenceData(char gapChar)
-  {
-    if (seqData == null)
-    {
-      return null;
-    }
-
-    StringBuffer sb = new StringBuffer();
-    String[] seqdatas = seqData.getSequenceStrings(gapChar);
-    for (int i = 0; i < seqdatas.length; i++)
-    {
-      sb.append(new jalview.util.Format("%-" + 15 + "s").form(sequences[i]
-              .getName()));
-      sb.append(" " + seqdatas[i] + "\n");
-    }
-    return sb.toString();
-  }
-
-  /**
    * DOCUMENT ME!
    * 
    * @param nd