X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2Fscoremodels%2FScoreMatrix.java;h=efaeb430d86bc58ace6f251d11c9e9b852c33601;hb=e601aa83423acffa85f09e10a946087ee84ae850;hp=9bec6e4cd7d795f6d0b621cf34c74f2171619f58;hpb=e5c87d2dd1d3ebceea890ef92c8a6374c62d3c83;p=jalview.git diff --git a/src/jalview/analysis/scoremodels/ScoreMatrix.java b/src/jalview/analysis/scoremodels/ScoreMatrix.java index 9bec6e4..efaeb43 100644 --- a/src/jalview/analysis/scoremodels/ScoreMatrix.java +++ b/src/jalview/analysis/scoremodels/ScoreMatrix.java @@ -20,7 +20,9 @@ */ package jalview.analysis.scoremodels; +import jalview.api.AlignmentViewPanel; import jalview.api.analysis.PairwiseScoreModelI; +import jalview.api.analysis.ScoreModelI; import jalview.api.analysis.SimilarityParamsI; import jalview.datamodel.AlignmentView; import jalview.math.Matrix; @@ -31,7 +33,8 @@ import java.util.Arrays; /** * A class that models a substitution score matrix for any given alphabet of - * symbols. Instances of this class are immutable and thread-safe. + * symbols. Instances of this class are immutable and thread-safe, so the same + * object is returned from calls to getInstance(). */ public class ScoreMatrix extends SimilarityScoreModel implements PairwiseScoreModelI @@ -582,4 +585,10 @@ public class ScoreMatrix extends SimilarityScoreModel implements { return maxValue; } + + @Override + public ScoreModelI getInstance(AlignmentViewPanel avp) + { + return this; + } }