X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2Fscoremodels%2FSimilarityParams.java;h=2a25fa8fd4647c95f408059b24510a753f887351;hb=98a277d5e5bd7a034b2acbc4d28544210ada392e;hp=58b08dd7928f27b8a933a97135b6ccb6c01953d0;hpb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;p=jalview.git

diff --git a/src/jalview/analysis/scoremodels/SimilarityParams.java b/src/jalview/analysis/scoremodels/SimilarityParams.java
index 58b08dd..2a25fa8 100644
--- a/src/jalview/analysis/scoremodels/SimilarityParams.java
+++ b/src/jalview/analysis/scoremodels/SimilarityParams.java
@@ -103,6 +103,8 @@ public class SimilarityParams implements SimilarityParamsI
   private boolean includeGaps;
 
   private boolean denominateByShortestLength;
+  
+  private String secondaryStructureSource;
 
   /**
    * Constructor
@@ -147,4 +149,69 @@ public class SimilarityParams implements SimilarityParamsI
   {
     return matchGaps;
   }
+
+  /**
+   * IDE-generated hashCode method
+   */
+  @Override
+  public int hashCode()
+  {
+    final int prime = 31;
+    int result = 1;
+    result = prime * result + (denominateByShortestLength ? 1231 : 1237);
+    result = prime * result + (includeGappedColumns ? 1231 : 1237);
+    result = prime * result + (includeGaps ? 1231 : 1237);
+    result = prime * result + (matchGaps ? 1231 : 1237);
+    return result;
+  }
+
+  /**
+   * IDE-generated equals method
+   */
+  @Override
+  public boolean equals(Object obj)
+  {
+    if (this == obj)
+    {
+      return true;
+    }
+    if (obj == null)
+    {
+      return false;
+    }
+    if (getClass() != obj.getClass())
+    {
+      return false;
+    }
+    SimilarityParams other = (SimilarityParams) obj;
+    if (denominateByShortestLength != other.denominateByShortestLength)
+    {
+      return false;
+    }
+    if (includeGappedColumns != other.includeGappedColumns)
+    {
+      return false;
+    }
+    if (includeGaps != other.includeGaps)
+    {
+      return false;
+    }
+    if (matchGaps != other.matchGaps)
+    {
+      return false;
+    }
+    return true;
+  }
+
+  @Override
+  public String getSecondaryStructureSource()
+  {
+    return secondaryStructureSource;
+  }
+
+  @Override
+  public void setSecondaryStructureSource(String secondaryStructureSource)
+  {
+    this.secondaryStructureSource = secondaryStructureSource;
+  }
 }