X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=11fa6152d5b26f294b282d9c2ee5c816278f6d96;hb=d15e991c6f3930ab77e3082b97a18e5ef7f3b571;hp=dd442f6da769cae65f090d15fd8ed60e68f947a0;hpb=d47a462ddd7bd3dd2a0529b6da03b220370c8ae5;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index dd442f6..11fa615 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -48,19 +48,4 @@ public interface AlignViewportI
   boolean getCentreColumnLabels();
 
   boolean isCalculationInProgress(AlignmentAnnotation alignmentAnnotation);
-
-  AlignmentAnnotation getAlignmentQualityAnnot();
-
-  AlignmentAnnotation getAlignmentConservationAnnotation();
-
-  /**
-   * Test to see if viewport is still open and active
-   * @return true indicates that all references to viewport should be dropped 
-   */
-  boolean isClosed();
-  /**
-   * get the associated calculation thread manager for the view
-   * @return
-   */
-  AlignCalcManagerI getCalcManager();
 }