X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=3c266e5ee49f1e00e0be0491f6cbe76ef9292e9a;hb=a79849ceb618568ed1b0ed2b400e1cf8e6d1ea81;hp=5715a957edd91f56706fa7d1f34f5e40279d80a4;hpb=31714b90648bba773f68736b8c1700ae53805eee;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index 5715a95..3c266e5 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -34,6 +34,8 @@ import jalview.datamodel.AlignmentExportData;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
 import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.ContactListI;
+import jalview.datamodel.ContactMatrixI;
 import jalview.datamodel.ProfilesI;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceCollectionI;
@@ -476,6 +478,8 @@ public interface AlignViewportI extends ViewStyleI
    */
   SearchResultsI getSearchResults();
 
+  ContactListI getContactList(AlignmentAnnotation _aa, int column);
+
   /**
    * Updates view settings with the given font. You may need to call
    * AlignmentPanel.fontChanged to update the layout geometry.
@@ -555,4 +559,6 @@ public interface AlignViewportI extends ViewStyleI
   Iterator<int[]> getViewAsVisibleContigs(boolean selectedRegionOnly);
 
   IdColumns getIdColumns();
+
+  ContactMatrixI getContactMatrix(AlignmentAnnotation alignmentAnnotation);
 }