X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=4f78145cc6d326947ae160705182c44d45951214;hb=dfa04e77181fccfa6229ffef1591fc9c622d9b39;hp=590ca1860d5f5c08525f2a8a74b357a97c8e150b;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index 590ca18..4f78145 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -160,11 +160,17 @@ public interface AlignViewportI
   void updateGroupAnnotationSettings(boolean applyGlobalSettings,
           boolean preserveNewGroupSettings);
 
+  void setSequenceColour(SequenceI seq, Color col);
+
+  Color getSequenceColour(SequenceI seq);
+
+  void updateSequenceIdColours();
 
   SequenceGroup getSelectionGroup();
 
   SequenceI[] getSequenceSelection();
 
+  void clearSequenceColours();
 
   CigarArray getViewAsCigars(boolean selectedRegionOnly);
 
@@ -178,5 +184,7 @@ public interface AlignViewportI
 
   char getGapCharacter();
 
+  void setColumnSelection(ColumnSelection cs);
+
 
 }