X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=5df38d600d8efbb01db37592e92522741035a88d;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=b4d2592da131bfa3d544699b9898509a1304902e;hpb=e2d6753e8cf3c5eaf8bccf34f4f5e9d651e9cb8e;p=jalview.git diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java index b4d2592..5df38d6 100644 --- a/src/jalview/api/AlignViewportI.java +++ b/src/jalview/api/AlignViewportI.java @@ -178,7 +178,7 @@ public interface AlignViewportI extends ViewStyleI */ void updateGroupAnnotationSettings(boolean applyGlobalSettings, boolean preserveNewGroupSettings); - + void setSequenceColour(SequenceI seq, Color col); Color getSequenceColour(SequenceI seq); @@ -251,8 +251,11 @@ public interface AlignViewportI extends ViewStyleI /** * get a copy of the currently visible alignment annotation - * @param selectedOnly if true - trim to selected regions on the alignment - * @return an empty list or new alignment annotation objects shown only visible columns trimmed to selected region only + * + * @param selectedOnly + * if true - trim to selected regions on the alignment + * @return an empty list or new alignment annotation objects shown only + * visible columns trimmed to selected region only */ List getVisibleAlignmentAnnotation( boolean selectedOnly); @@ -372,9 +375,4 @@ public interface AlignViewportI extends ViewStyleI * Set whether view should scroll to show the highlighted region of a sequence */ void setFollowHighlight(boolean b); - - public FeatureRenderer getFeatureRenderer(); - - public void setFeatureRenderer(FeatureRenderer featureRenderer); - }