X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=6ec31ef9886fdfe3827e1c470725960940a498a0;hb=8647c805617f33b905c4f72ebe30aab3c21b56f4;hp=324e6ca97618f5acac1b84e0df4702877db97b66;hpb=424c56371cd59181b994d7e3e8e91c4b7ba0b507;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index 324e6ca..6ec31ef 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -40,7 +40,7 @@ import java.util.Map;
  * @author jimp
  * 
  */
-public interface AlignViewportI
+public interface AlignViewportI extends ViewStyleI
 {
 
   int getCharWidth();
@@ -77,9 +77,7 @@ public interface AlignViewportI
 
   Hashtable[] getRnaStructureConsensusHash();
 
-  boolean getIgnoreGapsConsensus();
-
-  boolean getCentreColumnLabels();
+  boolean isIgnoreGapsConsensus();
 
   boolean isCalculationInProgress(AlignmentAnnotation alignmentAnnotation);
 
@@ -320,10 +318,9 @@ public interface AlignViewportI
    *          first column (inclusive, from 0)
    * @param max
    *          last column (exclusive)
-   * @return int[][] range of {start,end} visible positions TODO: change to list
-   *         of int ranges
+   * @return int[][] range of {start,end} visible positions
    */
-  int[][] getVisibleRegionBoundaries(int min, int max);
+  List<int[]> getVisibleRegionBoundaries(int min, int max);
 
   /**
    * This method returns an array of new SequenceI objects derived from the
@@ -355,6 +352,19 @@ public interface AlignViewportI
   boolean hasHiddenRows();
 
   /**
+   * 
+   * @return a copy of this view's current display settings
+   */
+  public ViewStyleI getViewStyle();
+
+  /**
+   * update the view's display settings with the given style set
+   * 
+   * @param settingsForView
+   */
+  public void setViewStyle(ViewStyleI settingsForView);
+
+  /**
    * Returns a viewport which holds the cDna for this (protein), or vice versa,
    * or null if none is set.
    * 
@@ -362,7 +372,6 @@ public interface AlignViewportI
    */
   AlignViewportI getCodingComplement();
 
-
   /**
    * Sets the viewport which holds the cDna for this (protein), or vice versa.
    * Implementation should guarantee that the reciprocal relationship is always
@@ -377,4 +386,10 @@ public interface AlignViewportI
    */
   boolean isNucleotide();
 
+  /**
+   * Returns an id guaranteed to be unique for this viewport.
+   * 
+   * @return
+   */
+  String getViewId();
 }