X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=8b0734035cef58585f485ec3870fe0fb2d868f34;hb=84724ad7b25f65eb6009f70d9b4cb89fc6796622;hp=7a0023195a41b77917571cc891696fcf029a9591;hpb=e20cd4d53a73081a49b378f276aa17cd5d7948fb;p=jalview.git diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java index 7a00231..8b07340 100644 --- a/src/jalview/api/AlignViewportI.java +++ b/src/jalview/api/AlignViewportI.java @@ -33,6 +33,7 @@ import jalview.datamodel.SequenceGroup; import jalview.datamodel.SequenceI; import jalview.renderer.ResidueShaderI; import jalview.schemes.ColourSchemeI; +import jalview.viewmodel.ViewportRanges; import java.awt.Color; import java.util.Hashtable; @@ -46,9 +47,13 @@ import java.util.Map; public interface AlignViewportI extends ViewStyleI { - int getEndRes(); - - int getStartRes(); + /** + * Get the ranges object containing details of the start and end sequences and + * residues + * + * @return + */ + public ViewportRanges getRanges(); /** * calculate the height for visible annotation, revalidating bounds where @@ -121,6 +126,13 @@ public interface AlignViewportI extends ViewStyleI AlignmentAnnotation getAlignmentConsensusAnnotation(); /** + * get the container for alignment gap annotation + * + * @return + */ + AlignmentAnnotation getAlignmentGapAnnotation(); + + /** * get the container for cDNA complement consensus annotation * * @return @@ -458,8 +470,4 @@ public interface AlignViewportI extends ViewStyleI * @return search results or null */ SearchResultsI getSearchResults(); - - int getStartSeq(); - - int getEndSeq(); }