X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=8b0734035cef58585f485ec3870fe0fb2d868f34;hb=84724ad7b25f65eb6009f70d9b4cb89fc6796622;hp=c6312abe7a563719c3eae811de0e94ccfef00d28;hpb=9201765247470c08d366abef2713c1c736adf2cb;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index c6312ab..8b07340 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -47,11 +47,13 @@ import java.util.Map;
 public interface AlignViewportI extends ViewStyleI
 {
 
-  ViewportRanges getRanges();
-  
-  int getEndRes();
-
-  int getStartRes();
+  /**
+   * Get the ranges object containing details of the start and end sequences and
+   * residues
+   * 
+   * @return
+   */
+  public ViewportRanges getRanges();
 
   /**
    * calculate the height for visible annotation, revalidating bounds where
@@ -124,6 +126,13 @@ public interface AlignViewportI extends ViewStyleI
   AlignmentAnnotation getAlignmentConsensusAnnotation();
 
   /**
+   * get the container for alignment gap annotation
+   * 
+   * @return
+   */
+  AlignmentAnnotation getAlignmentGapAnnotation();
+
+  /**
    * get the container for cDNA complement consensus annotation
    * 
    * @return
@@ -461,8 +470,4 @@ public interface AlignViewportI extends ViewStyleI
    * @return search results or null
    */
   SearchResultsI getSearchResults();
-
-  int getStartSeq();
-
-  int getEndSeq();
 }