X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=e30a052ecc8b67f4ec44526eb19e9d0072748d56;hb=494a321d41897be1492b973fdb37fa4ccb0ec94e;hp=bd7d53dadae700248dcedacab65cc5192e1a801b;hpb=853624fb32058cccc544ae7d13af6ad4b0800b6c;p=jalview.git diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java index bd7d53d..e30a052 100644 --- a/src/jalview/api/AlignViewportI.java +++ b/src/jalview/api/AlignViewportI.java @@ -26,6 +26,7 @@ import jalview.datamodel.AlignmentI; import jalview.datamodel.AlignmentView; import jalview.datamodel.CigarArray; import jalview.datamodel.ColumnSelection; +import jalview.datamodel.ProfileI; import jalview.datamodel.SequenceCollectionI; import jalview.datamodel.SequenceGroup; import jalview.datamodel.SequenceI; @@ -81,7 +82,7 @@ public interface AlignViewportI extends ViewStyleI ColumnSelection getColumnSelection(); - Hashtable[] getSequenceConsensusHash(); + ProfileI[] getSequenceConsensusHash(); /** * Get consensus data table for the cDNA complement of this alignment (if any) @@ -144,7 +145,7 @@ public interface AlignViewportI extends ViewStyleI * * @param hconsensus */ - void setSequenceConsensusHash(Hashtable[] hconsensus); + void setSequenceConsensusHash(ProfileI[] hconsensus); /** * Set the cDNA complement consensus for the viewport