X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=fa0a3b05543a3f636680b5e4286cce9dd11282f8;hb=dd78fb858ae1d6b7704ddb29617029f429f07e9b;hp=b813aab4ce0ad1e85f5427322c63a98fb20f3436;hpb=0664dcf0200c56c708e7e5972d2e0b1a4c4211c2;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index b813aab..fa0a3b0 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -521,6 +521,22 @@ public interface AlignViewportI extends ViewStyleI
   void addSequenceGroup(SequenceGroup sequenceGroup);
 
   /**
+   * Returns true if autocalculated annotations are shown above other
+   * annotations, false if below
+   * 
+   * @return
+   */
+  boolean isShowAutocalculatedAbove();
+
+  /**
+   * Sets the flag for whether autocalculated annotations are shown above (true)
+   * or below (false) other annotations
+   * 
+   * @param showAutocalculatedAbove
+   */
+  void setShowAutocalculatedAbove(boolean showAutocalculatedAbove);
+
+  /**
    * Sets the sort order to apply to annotations
    * 
    * @param sortAnnotationsBy