X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentColsCollectionI.java;h=5fe0567f547cb3ee3eeccabd849f526d9f6a34da;hb=3e8e8e87b0cf263412a93d4b46c32c319a08af8f;hp=44cc58744985bd21df5d956692763259d6d325c2;hpb=3f03cc818538d68c829869c6341112c44cf648d9;p=jalview.git
diff --git a/src/jalview/api/AlignmentColsCollectionI.java b/src/jalview/api/AlignmentColsCollectionI.java
index 44cc587..5fe0567 100644
--- a/src/jalview/api/AlignmentColsCollectionI.java
+++ b/src/jalview/api/AlignmentColsCollectionI.java
@@ -1,5 +1,27 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.api;
+import java.util.BitSet;
+
public interface AlignmentColsCollectionI extends Iterable
{
/**
@@ -17,4 +39,19 @@ public interface AlignmentColsCollectionI extends Iterable
* @return true if there is at least 1 hidden column
*/
public boolean hasHidden();
+
+ /**
+ * Get the bitset where a set bit indicates a column to be shown
+ *
+ * @return a BitSet
+ */
+ public BitSet getShownBitSet();
+
+ /**
+ * Get the hidden-column bitset, (which may or may not be hidden in the
+ * overview).
+ *
+ * @return
+ */
+ BitSet getHiddenBitSet();
}