X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=0b1ca219421cbae59acba8e959675d0cb49355e6;hb=99e3934ef65903edc504e8495a95f6b519914f67;hp=ef59996d6f1048a78a70124912e01c7ba4b1d2f5;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index ef59996..0b1ca21 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -43,9 +43,10 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * 
    * @param updateOverview
    *          - if true, the overview panel will also be updated and repainted
+   * @param updateStructures
+   *          - if true then any linked structure views will also be updated
    */
-
-  void paintAlignment(boolean updateOverview);
+  void paintAlignment(boolean updateOverview, boolean updateStructures);
 
   /**
    * automatically adjust annotation panel height for new annotation whilst