X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=70bb3d65749d7a91ad59631475bd1521851d57ad;hb=12ae2bfcbee4c4508625c6731ba62e6c10f19b19;hp=d9c97f415b1ff1c615976be5973f22b9585a1898;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index d9c97f4..70bb3d6 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -26,9 +26,20 @@ import jalview.structure.StructureSelectionManager;
  * @author JimP
  *
  */
-public interface AlignmentViewPanel
+public interface AlignmentViewPanel extends OOMHandlerI
 {
 
   AlignmentI getAlignment();
   StructureSelectionManager getStructureSelectionManager();
+  /**
+   * repaint the alignment view after a datamodel update.
+   * @param updateOverview - if true, the overview panel will also be updated and repainted 
+   */
+  
+  void paintAlignment(boolean updateOverview);
+  /**
+   * automatically adjust annotation panel height for new annotation
+   * whilst ensuring the alignment is still visible.
+   */
+  void adjustAnnotationHeight();
 }