X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=70bb3d65749d7a91ad59631475bd1521851d57ad;hb=d64f1df4fdb6c90c7ed36624174eac8b1dd52511;hp=d971acb25366478e08bf5586b744c40db5c61c61;hpb=c564d188c1a8106d866651eba5c4cf60fbc0c232;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index d971acb..70bb3d6 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -31,5 +31,15 @@ public interface AlignmentViewPanel extends OOMHandlerI
 
   AlignmentI getAlignment();
   StructureSelectionManager getStructureSelectionManager();
-  void paintAlignment(boolean b);
+  /**
+   * repaint the alignment view after a datamodel update.
+   * @param updateOverview - if true, the overview panel will also be updated and repainted 
+   */
+  
+  void paintAlignment(boolean updateOverview);
+  /**
+   * automatically adjust annotation panel height for new annotation
+   * whilst ensuring the alignment is still visible.
+   */
+  void adjustAnnotationHeight();
 }