X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=9593a5b7aa2019e0c9c32be3dac2900e0372def9;hb=4b2392caa53f1de3400e7916d1d9c7b815d446f4;hp=a6eaba2d2849bccfbf96461c99916ac76635add6;hpb=e1cd94839128776e14e51ded3f3be2dcc7e72273;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index a6eaba2..9593a5b 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -23,6 +23,8 @@ package jalview.api;
 import jalview.datamodel.AlignmentI;
 import jalview.structure.StructureSelectionManager;
 
+import java.awt.image.BufferedImage;
+
 /**
  * abstract interface implemented by alignment panels holding an alignment view
  * 
@@ -32,6 +34,8 @@ import jalview.structure.StructureSelectionManager;
 public interface AlignmentViewPanel extends OOMHandlerI
 {
 
+  AlignViewportI getAlignViewport();
+
   AlignmentI getAlignment();
 
   StructureSelectionManager getStructureSelectionManager();
@@ -41,9 +45,10 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * 
    * @param updateOverview
    *          - if true, the overview panel will also be updated and repainted
+   * @param updateStructures
+   *          - if true then any linked structure views will also be updated
    */
-
-  void paintAlignment(boolean updateOverview);
+  void paintAlignment(boolean updateOverview, boolean updateStructures);
 
   /**
    * automatically adjust annotation panel height for new annotation whilst
@@ -54,5 +59,15 @@ public interface AlignmentViewPanel extends OOMHandlerI
   FeatureRenderer getFeatureRenderer();
 
   FeatureRenderer cloneFeatureRenderer();
-  
+
+  /**
+   * 
+   * @return displayed name for the view
+   */
+  String getViewName();
+
+  SequenceRenderer getSequenceRenderer();
+
+  void overviewDone(BufferedImage miniMe);
+
 }