X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=9593a5b7aa2019e0c9c32be3dac2900e0372def9;hb=80634498762666e6acc92368716bf1a4d4f42f7b;hp=2f2c2f40abb297b230b69818dd1efddef49c18d8;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index 2f2c2f4..9593a5b 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -23,6 +23,8 @@ package jalview.api;
 import jalview.datamodel.AlignmentI;
 import jalview.structure.StructureSelectionManager;
 
+import java.awt.image.BufferedImage;
+
 /**
  * abstract interface implemented by alignment panels holding an alignment view
  * 
@@ -43,9 +45,10 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * 
    * @param updateOverview
    *          - if true, the overview panel will also be updated and repainted
+   * @param updateStructures
+   *          - if true then any linked structure views will also be updated
    */
-
-  void paintAlignment(boolean updateOverview);
+  void paintAlignment(boolean updateOverview, boolean updateStructures);
 
   /**
    * automatically adjust annotation panel height for new annotation whilst
@@ -62,4 +65,9 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * @return displayed name for the view
    */
   String getViewName();
+
+  SequenceRenderer getSequenceRenderer();
+
+  void overviewDone(BufferedImage miniMe);
+
 }