X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=9593a5b7aa2019e0c9c32be3dac2900e0372def9;hb=a83adb45bdf9554e270921b4baad94defd314b36;hp=fcda0772683d173ccee03e93a49e97176b4acb0a;hpb=362f2db1b01f3562784864a1d6ac5f7b9be0a18a;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index fcda077..9593a5b 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,19 +1,73 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
  * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
 
 import jalview.datamodel.AlignmentI;
 import jalview.structure.StructureSelectionManager;
 
+import java.awt.image.BufferedImage;
+
 /**
  * abstract interface implemented by alignment panels holding an alignment view
+ * 
  * @author JimP
- *
+ * 
  */
-public interface AlignmentViewPanel
+public interface AlignmentViewPanel extends OOMHandlerI
 {
 
+  AlignViewportI getAlignViewport();
+
   AlignmentI getAlignment();
+
   StructureSelectionManager getStructureSelectionManager();
+
+  /**
+   * repaint the alignment view after a datamodel update.
+   * 
+   * @param updateOverview
+   *          - if true, the overview panel will also be updated and repainted
+   * @param updateStructures
+   *          - if true then any linked structure views will also be updated
+   */
+  void paintAlignment(boolean updateOverview, boolean updateStructures);
+
+  /**
+   * automatically adjust annotation panel height for new annotation whilst
+   * ensuring the alignment is still visible.
+   */
+  void adjustAnnotationHeight();
+
+  FeatureRenderer getFeatureRenderer();
+
+  FeatureRenderer cloneFeatureRenderer();
+
+  /**
+   * 
+   * @return displayed name for the view
+   */
+  String getViewName();
+
+  SequenceRenderer getSequenceRenderer();
+
+  void overviewDone(BufferedImage miniMe);
+
 }