X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignmentViewPanel.java;h=ad3fbed4ee11971387815aac394786387ac963b2;hb=9811278f9e18ee6cb88470dbae98da046734a0af;hp=2f2c2f40abb297b230b69818dd1efddef49c18d8;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/src/jalview/api/AlignmentViewPanel.java b/src/jalview/api/AlignmentViewPanel.java
index 2f2c2f4..ad3fbed 100644
--- a/src/jalview/api/AlignmentViewPanel.java
+++ b/src/jalview/api/AlignmentViewPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -43,9 +43,10 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * 
    * @param updateOverview
    *          - if true, the overview panel will also be updated and repainted
+   * @param updateStructures
+   *          - if true then any linked structure views will also be updated
    */
-
-  void paintAlignment(boolean updateOverview);
+  void paintAlignment(boolean updateOverview, boolean updateStructures);
 
   /**
    * automatically adjust annotation panel height for new annotation whilst
@@ -62,4 +63,18 @@ public interface AlignmentViewPanel extends OOMHandlerI
    * @return displayed name for the view
    */
   String getViewName();
+
+  /**
+   * Answers the title of the panel
+   * 
+   * @return
+   */
+  String getTitle();
+
+  /**
+   * Make/Unmake this alignment panel the current input focus
+   * 
+   * @param b
+   */
+  void setSelected(boolean b);
 }