X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FComplexAlignFile.java;h=1b579adc519f810b90dcfb33bf3b94b5cbf14edf;hb=e1cb1f4ff4ae05504c806d99395358629c807956;hp=4349382e98f79250a01d1fa23f017e8a944fa860;hpb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;p=jalview.git

diff --git a/src/jalview/api/ComplexAlignFile.java b/src/jalview/api/ComplexAlignFile.java
index 4349382..1b579ad 100644
--- a/src/jalview/api/ComplexAlignFile.java
+++ b/src/jalview/api/ComplexAlignFile.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,9 +20,8 @@
  */
 package jalview.api;
 
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SequenceI;
-import jalview.schemes.ColourSchemeI;
 
 /**
  * This interface should be implemented by complex file parser with the ability
@@ -44,14 +43,14 @@ public interface ComplexAlignFile
    * 
    * @return
    */
-  public ColourSchemeI getColourScheme();
+  public String getGlobalColourScheme();
 
   /**
    * Retrieves the Column selection/hidden column from a complex file parser
    * 
    * @return
    */
-  public ColumnSelection getColumnSelection();
+  public HiddenColumns getHiddenColumns();
 
   /**
    * Retrieves hidden sequences from a complex file parser