X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FFeatureColourI.java;h=01eb7faa20f9d7ebf964fe353686b25698cac9a3;hb=1810df9d010000e434975a8a4e68dcbda238f7f1;hp=0a333caf761a51499a313c7f2cecf91798574bc9;hpb=0b1c761dfaa8242f122cf868e8897a06ec6eb727;p=jalview.git

diff --git a/src/jalview/api/FeatureColourI.java b/src/jalview/api/FeatureColourI.java
index 0a333ca..01eb7fa 100644
--- a/src/jalview/api/FeatureColourI.java
+++ b/src/jalview/api/FeatureColourI.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.api;
 
 import jalview.datamodel.SequenceFeature;
@@ -14,8 +34,6 @@ public interface FeatureColourI
    */
   boolean isGraduatedColour();
 
-  void setGraduatedColour(boolean b);
-
   /**
    * Returns the feature colour (when isGraduatedColour answers false)
    * 
@@ -95,6 +113,13 @@ public interface FeatureColourI
 
   void setThreshold(float f);
 
+  /**
+   * Answers true if the colour varies between the actual minimum and maximum
+   * score values of the feature, or false if between absolute minimum and
+   * maximum values (or if not a graduated colour).
+   * 
+   * @return
+   */
   boolean isAutoScaled();
 
   void setAutoScaled(boolean b);
@@ -146,4 +171,11 @@ public interface FeatureColourI
    * @param max
    */
   void updateBounds(float min, float max);
+
+  /**
+   * Returns the colour in Jalview features file format
+   * 
+   * @return
+   */
+  String toJalviewFormat(String featureType);
 }