X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FSequenceRenderer.java;h=d5d07ef956f9ba089dcf2a9b5f775c22bdaaf4ca;hb=014225ccc81b43fa06c1cba99b8934c71e65b8d9;hp=dcc50d5a1cb73404711c2485fefb79b2c7c4844f;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/jalview/api/SequenceRenderer.java b/src/jalview/api/SequenceRenderer.java
index dcc50d5..d5d07ef 100644
--- a/src/jalview/api/SequenceRenderer.java
+++ b/src/jalview/api/SequenceRenderer.java
@@ -1,29 +1,51 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
 
+import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.renderer.seqfeatures.FeatureColourFinder;
 
 import java.awt.Color;
+import java.awt.Graphics;
 
 public interface SequenceRenderer
 {
 
-  Color getResidueBoxColour(SequenceI sequenceI, int r);
+  Color getResidueColour(SequenceI seq, int position,
+          FeatureColourFinder finder);
+
+  /**
+   * Configure the Graphics canvas and render options for the renderer
+   * @param g - the canvas to render to
+   * @param renderGaps - when true, gap characters will be included when rendered
+   *          
+   */
+  void prepare(Graphics g, boolean renderGaps);
+
+  void drawSequence(SequenceI nextSeq, SequenceGroup[] findAllGroups,
+          int startRes, int endRes, int i);
+
+  void drawHighlightedText(SequenceI nextSeq, int i, int j, int k, int l);
+
+  void drawCursor(Graphics g, char s, int i, int j);
 
 }