X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FSequenceStructureBinding.java;h=91ee9cc7b8a342fba6d2e7d3bfd3409e66b2cab1;hb=7596cd64543481df859a9bd2e73a3b3bb6b2e42c;hp=e95f047dfd38a14d184726ebb49c28ecf817c2cf;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/api/SequenceStructureBinding.java b/src/jalview/api/SequenceStructureBinding.java
index e95f047..91ee9cc 100644
--- a/src/jalview/api/SequenceStructureBinding.java
+++ b/src/jalview/api/SequenceStructureBinding.java
@@ -1,29 +1,51 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.api;
 
 /**
- * methods for interacting with the binding between a structure visualization and one or more Jalview views.
- * @author JimP
- * prototype class - this may disappear !
+ * methods for interacting with the binding between a structure visualization
+ * and one or more Jalview views.
+ * 
+ * @author JimP prototype class - this may disappear !
  */
 public interface SequenceStructureBinding
 {
 
-  // todo: decide what this really means - we could return a reference to the alignment/jmol binding, or some other binding.
+  /**
+   * 
+   * @return true if Jalview or the Viewer is still restoring state or loading
+   *         is still going on (see setFinishedLoadingFromArchive)
+   */
+  void setLoadingFromArchive(boolean loadingFromArchive);
+
+  boolean isLoadingFromArchive();
+
+  /**
+   * modify flag which controls if sequence colouring events are honoured by the
+   * binding. Should be true for normal operation
+   * 
+   * @param finishedLoading
+   */
+  void setFinishedLoadingFromArchive(boolean finishedLoading);
+
+  boolean isLoadingFinished();
+
 }