X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FViewStyleI.java;fp=src%2Fjalview%2Fapi%2FViewStyleI.java;h=933c270462c99a4e95eafd53b5ea95edce1d94a8;hb=882adcab8cf6f9c72a7e946223f817878c5ee444;hp=0313c5cf860366dcf814975ecc887d8e96a274de;hpb=9f2ec6537646ad690d67fc7e4c2564e758fcaced;p=jalview.git

diff --git a/src/jalview/api/ViewStyleI.java b/src/jalview/api/ViewStyleI.java
index 0313c5c..933c270 100644
--- a/src/jalview/api/ViewStyleI.java
+++ b/src/jalview/api/ViewStyleI.java
@@ -79,10 +79,21 @@ public interface ViewStyleI
 
   void setShowUnconserved(boolean showunconserved);
 
+  /**
+   * @return true if a reference sequence is set and should be displayed
+   */
   boolean isDisplayReferenceSeq();
 
+  /**
+   * @return set the flag for displaying reference sequences when they are
+   *         available
+   */
   void setDisplayReferenceSeq(boolean displayReferenceSeq);
 
+  /**
+   * @return true if colourschemes should render according to reference sequence
+   *         rather than consensus if available
+   */
   boolean isColourByReferenceSeq();
 
   void setSeqNameItalics(boolean default1);
@@ -95,14 +106,26 @@ public interface ViewStyleI
 
   void setRightAlignIds(boolean rightAlignIds);
 
+  /**
+   * Returns true if annotation panel should be shown below alignment
+   * 
+   * @return
+   */
   boolean isShowAnnotation();
 
+  /**
+   * Set flag for whether annotation panel should be shown below alignment
+   * 
+   * @param b
+   */
   void setShowAnnotation(boolean b);
 
-  void setShowSeqFeaturesHeight(boolean selected);
-
-  boolean isShowSequenceFeaturesHeight();
+  void setShowSequenceFeaturesHeight(boolean selected);
 
+  /**
+   * @return true set flag for deciding if colourschemes should render according
+   *         to reference sequence rather than consensus if available
+   */
   void setColourByReferenceSeq(boolean colourByReferenceSeq);
 
   Color getTextColour();
@@ -117,7 +140,7 @@ public interface ViewStyleI
 
   boolean isShowColourText();
 
-  boolean isShowSeqFeaturesHeight();
+  boolean isShowSequenceFeaturesHeight();
 
   void setConservationColourSelected(boolean conservationColourSelected);