X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2Fstructures%2FJalviewStructureDisplayI.java;h=12723e9621ca43fb35f54eef52c319542a007f7b;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=e37f46710329352d7dd0b94c2462ecb73f6b5339;hpb=ecfc49bc5a7e416c0f967677651923993f105dd8;p=jalview.git

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index e37f467..12723e9 100644
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.api.structures;
 
 import jalview.api.FeatureRenderer;
@@ -6,6 +26,8 @@ import jalview.api.SequenceStructureBinding;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JalviewJmolBinding;
+import jalview.schemes.ColourSchemeI;
+import jalview.schemes.UserColourScheme;
 import jalview.structure.StructureMappingcommandSet;
 import jalview.structure.StructureSelectionManager;
 
@@ -15,18 +37,21 @@ public interface JalviewStructureDisplayI
   SequenceStructureBinding getBinding();
 
   /**
-   * @return true if there is an active GUI handling a structure display 
+   * @return true if there is an active GUI handling a structure display
    */
   boolean isVisible();
 
   /**
-   * enable or disable the structure display - note this might just hide or show a GUI element, but not actually reset the display
+   * enable or disable the structure display - note this might just hide or show
+   * a GUI element, but not actually reset the display
+   * 
    * @param b
    */
   void setVisible(boolean b);
 
   /**
-   * free up any external resources that were used by this display and collect garbage
+   * free up any external resources that were used by this display and collect
+   * garbage
    */
   void dispose();
 
@@ -34,6 +59,10 @@ public interface JalviewStructureDisplayI
    * shutdown any structure viewing processes started by this display
    */
   void closeViewer();
-
+  /**
+   * apply a colourscheme to the structures in the viewer
+   * @param colourScheme
+   */
+  void setJalviewColourScheme(ColourSchemeI colourScheme);
 
 }