X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2Fstructures%2FJalviewStructureDisplayI.java;h=532e545ae1cb499eaa3e2afb4b705ef08410ccaa;hb=155a17a423e980849fd4dc5f857da1a72b0010b9;hp=506334c00c2a7f815ce641482ed8c51a9dd558c0;hpb=48144232e86777008fb78dd1233ebb0eb3cc34cb;p=jalview.git

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index 506334c..532e545 100644
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -20,10 +20,13 @@
  */
 package jalview.api.structures;
 
+import java.io.File;
+
 import jalview.api.AlignmentViewPanel;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
-import jalview.schemes.ColourSchemeI;
+import jalview.gui.AlignmentPanel;
+import jalview.gui.StructureViewer;
 import jalview.structures.models.AAStructureBindingModel;
 
 public interface JalviewStructureDisplayI
@@ -59,11 +62,9 @@ public interface JalviewStructureDisplayI
   void closeViewer(boolean closeExternalViewer);
 
   /**
-   * apply a colourscheme to the structures in the viewer
-   * 
-   * @param colourScheme
+   * Check if the external viewer is still running
    */
-  void setJalviewColourScheme(ColourSchemeI colourScheme);
+  boolean stillRunning();
 
   /**
    * 
@@ -169,4 +170,26 @@ public interface JalviewStructureDisplayI
    */
   void stopProgressBar(String msg, long handle);
 
+  /**
+   * 
+   * @return true if the actions menu is shown for this viewer
+   */
+  boolean hasViewerActionsMenu();
+
+  String getViewId();
+
+  StructureViewer.ViewerType getViewerType();
+
+  boolean isUsedforaligment(AlignmentViewPanel ap);
+
+  boolean isColouredByViewer();
+
+  int getHeight();
+
+  int getWidth();
+
+  int getY();
+
+  File saveSession();
+
 }