X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2Fstructures%2FJalviewStructureDisplayI.java;h=a27cec6ea3502e7c2afc3a20eab800f102e6e5e8;hb=e06ef51ba3dd8cdae7632d71db162ff416b88256;hp=b4612cfef6264d1c87a07f70552a2c3a0bc1c0f9;hpb=e07d62e6efbd954164c27e15eee49f57aa2e1b4c;p=jalview.git

diff --git a/src/jalview/api/structures/JalviewStructureDisplayI.java b/src/jalview/api/structures/JalviewStructureDisplayI.java
index b4612cf..a27cec6 100644
--- a/src/jalview/api/structures/JalviewStructureDisplayI.java
+++ b/src/jalview/api/structures/JalviewStructureDisplayI.java
@@ -20,6 +20,9 @@
  */
 package jalview.api.structures;
 
+import jalview.api.AlignmentViewPanel;
+import jalview.datamodel.PDBEntry;
+import jalview.datamodel.SequenceI;
 import jalview.schemes.ColourSchemeI;
 import jalview.structures.models.AAStructureBindingModel;
 
@@ -69,4 +72,21 @@ public interface JalviewStructureDisplayI
    */
   boolean hasMapping();
 
+  // construction method - move to another interface ?
+  boolean addAlreadyLoadedFile(SequenceI[] seq, String[] chains,
+          AlignmentViewPanel apanel, String pdbId);
+
+  // construction method - move to another interface ?
+  boolean addToExistingViewer(PDBEntry pdbentry, SequenceI[] seq,
+          String[] chains, AlignmentViewPanel apanel, String pdbId);
+
+  /**
+   * refresh GUI after reconfiguring structure(s) and alignment panels
+   */
+  void updateTitleAndMenus();
+
+  boolean isAlignAddedStructures();
+
+  void setAlignAddedStructures(boolean alignAdded);
+
 }